- Department of Anaesthesiology, Resuscitation and Intensive Care Medicine
- Department of Anatomy
- Department of Clinic Subjects
- Department of Clinical Neurosciences
- Department of Craniofacial Surgery
- Department of Dentistry
- Department of Epidemiology and Public Health
- Department of Forensic Medicine
- Department of Gynaecology and Obstetrics
- Department of Hematooncology
- Department of Histology and Embryology
- Department of Imaging Methods
- Department of Nursing and Midwifery
- Department of Oncology
- Department of Pediatrics
- Department of Rehabilitation and Sports Medicine
- Department of Surgical Studies
- Institute of Clinical Pharmacology
- Institute of Emergency Medicine
- Institute of Molecular and Clinical Pathology and Medical Genetics
- Institute of Laboratory Medicine
- Institute of Physiology and Pathophysiology
- Centre for Health Research
- Centre for Hyperbaric Medicine of Faculty of Medicine University of Ostrava and Ostrava City Hospital
- Simulation Centre / Training Hospital (SIMLEK)
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